Download MendeleyCrystal Structure of Phosphoribosylaminoimidazole-Succinocarboxamide Synthase from Clostridium perfringens
Kim, Y., Mulligan, R., Kwon, K., Anderson, W.F., Joachimiak, A.To be published.
3NUA
Crystal Structure of Phosphoribosylaminoimidazole-Succinocarboxamide Synthase from Clostridium perfringens
- PDB DOI: https://doi.org/10.2210/pdb3NUA/pdb
- Classification: LIGASE
- Organism(s): Clostridium perfringens ATCC 13124
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2010-07-06 Released: 2010-08-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.161
- R-Value Work: 0.143
- R-Value Observed: 0.144
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoribosylaminoimidazole-succinocarboxamide synthase | 238 | Clostridium perfringens ATCC 13124 | Mutation(s): 0 Gene Names: CPF_0673, purC EC: 6.3.2.6 |  | |
UniProt | |||||
Find proteins for Q0TTB4 (Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)) Explore Q0TTB4 Go to UniProtKB: Q0TTB4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0TTB4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP Query on ADP | C [auth A], G [auth B], H [auth B] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| AMP Query on AMP | D [auth A] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N |  | ||
| CIT Query on CIT | E [auth A], I [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.161
- R-Value Work: 0.143
- R-Value Observed: 0.144
- Space Group: P 21 21 2
- Diffraction Data: https://doi.org/10.18430/M33NUA
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.877 | α = 90 |
| b = 148.913 | β = 90 |
| c = 45.315 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| MOLREP | phasing |
| BALBES | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-08-25 Deposition Author(s): Kim, Y., Mulligan, R., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2010-08-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
