Download MendeleyCrystal Structure of Adenine Deaminase from Agrobacterium tumefaciens (str. C 58)
Bagaria, A., Kumaran, D., Burley, S.K., Swaminathan, S.To be published.
3NQB
Crystal Structure of Adenine Deaminase from Agrobacterium tumefaciens (str. C 58)
- PDB DOI: https://doi.org/10.2210/pdb3NQB/pdb
- Classification: HYDROLASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-06-29 Released: 2010-07-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.21 Å
- R-Value Free: 0.235
- R-Value Work: 0.172
- R-Value Observed: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenine deaminase 2 | 608 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: ade2, adeC, Atu4426, AGR_L_883 EC: 3.5.4.2 |  | |
UniProt | |||||
Find proteins for Q7CUX4 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q7CUX4 Go to UniProtKB: Q7CUX4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7CUX4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MN Query on MN | C [auth A] D [auth A] E [auth A] F [auth B] G [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.21 Å
- R-Value Free: 0.235
- R-Value Work: 0.172
- R-Value Observed: 0.175
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.101 | α = 90 |
| b = 130.97 | β = 97.98 |
| c = 69.999 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHARP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-07-28 Deposition Author(s): Bagaria, A., Kumaran, D., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-07-28
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2023-12-27
Changes: Data collection, Database references
