Download MendeleyCrystal structure of a Pfam DUF849 domain containing protein (Reut_A1631) from Ralstonia eutropha JMP134 at 1.90 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3NO5
Crystal structure of a Pfam DUF849 domain containing protein (Reut_A1631) from Ralstonia eutropha JMP134 at 1.90 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3NO5/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Cupriavidus pinatubonensis JMP134
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-06-24 Released: 2010-08-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.224
- R-Value Work: 0.206
- R-Value Observed: 0.207
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 275 | Cupriavidus pinatubonensis JMP134 | Mutation(s): 0 Gene Names: Reut_A1631 |  | |
UniProt | |||||
Find proteins for Q471D6 (Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)) Explore Q471D6 Go to UniProtKB: Q471D6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q471D6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | G [auth A] J [auth B] K [auth C] R [auth D] W [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | H [auth A] I [auth A] L [auth C] M [auth C] N [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | P [auth C], Q [auth C], V [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.224
- R-Value Work: 0.206
- R-Value Observed: 0.207
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M33NO5
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 83.181 | α = 90 |
| b = 81.221 | β = 103.68 |
| c = 140.429 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| PHENIX | refinement |
| PHASER | phasing |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| BUSTER | refinement |
Entry History
Deposition Data
- Released Date: 2010-08-25 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-08-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2023-02-01
Changes: Database references, Derived calculations - Version 1.4: 2023-09-20
Changes: Data collection, Refinement description - Version 1.5: 2023-11-22
Changes: Data collection
