Download MendeleyCrystal structure of the TetR transcriptional regulator from Nitrosomonas europaea ATCC 19718
Knapik, A., Chruszcz, M., Cymborowski, M., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W.To be published.
3NI7
Crystal structure of the TetR transcriptional regulator from Nitrosomonas europaea ATCC 19718
- PDB DOI: https://doi.org/10.2210/pdb3NI7/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Nitrosomonas europaea
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-06-15 Released: 2010-08-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.78 Å
- R-Value Free: 0.279
- R-Value Work: 0.249
- R-Value Observed: 0.250
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bacterial regulatory proteins, TetR family | 213 | Nitrosomonas europaea | Mutation(s): 0 Gene Names: NE0300 |  | |
UniProt | |||||
Find proteins for Q82XH4 (Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)) Explore Q82XH4 Go to UniProtKB: Q82XH4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q82XH4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.78 Å
- R-Value Free: 0.279
- R-Value Work: 0.249
- R-Value Observed: 0.250
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.222 | α = 90 |
| b = 75.378 | β = 90 |
| c = 98.079 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | model building |
| SHELXD | phasing |
| RESOLVE | model building |
| ARP/wARP | model building |
| BUCCANEER | model building |
| REFMAC | refinement |
| Coot | model building |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
| BUCCANEER | phasing |
Entry History
Deposition Data
- Released Date: 2010-08-11 Deposition Author(s): Knapik, A., Chruszcz, M., Cymborowski, M., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-08-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2012-06-20
Changes: Database references - Version 1.3: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
