Download MendeleyCrystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus
Seyedarabi, A., Pickersgill, R.W.To be published.
3NDC
Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus
- PDB DOI: https://doi.org/10.2210/pdb3NDC/pdb
- Classification: TRANSFERASE
- Organism(s): Rhodobacter capsulatus SB 1003
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-06-07 Released: 2011-06-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.222
- R-Value Work: 0.187
- R-Value Observed: 0.189
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Precorrin-4 C(11)-methyltransferase | 264 | Rhodobacter capsulatus SB 1003 | Mutation(s): 0 Gene Names: cobM EC: 2.1.1.133 |  | |
UniProt | |||||
Find proteins for O68100 (Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)) Explore O68100 Go to UniProtKB: O68100 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O68100 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAH Query on SAH | C [auth A], D [auth B] | S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.222
- R-Value Work: 0.187
- R-Value Observed: 0.189
- Space Group: P 65
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.517 | α = 90 |
| b = 84.517 | β = 90 |
| c = 144.637 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MOLREP | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2011-06-15 Deposition Author(s): Seyedarabi, A., Pickersgill, R.W.
Revision History (Full details and data files)
- Version 1.0: 2011-06-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
