Download MendeleyStructures of the apo and holo forms of NAD-dependent formate dehydrogenase from the higher-plant Arabidopsis Thaliana
Shabalin, I.G., Polyakov, K.M., Skirgello, O.E., Tishkov, V.I., Popov, V.O.To be published.
3NAQ
Apo-form of NAD-dependent formate dehydrogenase from higher-plant Arabidopsis thaliana
- PDB DOI: https://doi.org/10.2210/pdb3NAQ/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-06-02 Released: 2010-07-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.197
- R-Value Work: 0.167
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Formate dehydrogenase | 357 | Arabidopsis thaliana | Mutation(s): 0 Gene Names: At5g14780, FDH, FDH1, T9L3_80 EC: 1.2.1.2 |  | |
UniProt | |||||
Find proteins for Q9S7E4 (Arabidopsis thaliana) Explore Q9S7E4 Go to UniProtKB: Q9S7E4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9S7E4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] D [auth A] E [auth A] F [auth B] G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.197
- R-Value Work: 0.167
- R-Value Observed: 0.169
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.33 | α = 90 |
| b = 106.23 | β = 90 |
| c = 106.5 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| DNA | data collection |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2010-07-07 Deposition Author(s): Shabalin, I.G., Polyakov, K.M., Serov, A.E., Skirgello, O.E., Sadykhov, E.G., Dorovatovskiy, P.V., Tishkov, V.I., Popov, V.O.
Revision History (Full details and data files)
- Version 1.0: 2010-07-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations
