Download MendeleyCrsystal Structure of Protein of Unknown Function from Mine Drainage Metagenome Leptospirillum rubarum
Kim, Y., Xu, X., Cui, H., Chin, S., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
3NA2
Crystal Structure of Protein of Unknown Function from Mine Drainage Metagenome Leptospirillum rubarum
- PDB DOI: https://doi.org/10.2210/pdb3NA2/pdb
- Classification: Structural Genomics, Unknown function
- Organism(s): Leptospirillum rubarum
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2010-05-31 Released: 2010-07-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 Å
- R-Value Free: 0.248
- R-Value Work: 0.186
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 172 | Leptospirillum rubarum | Mutation(s): 0 Gene Names: UBAL2_80620259 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | F [auth A], H [auth D] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| ACY Query on ACY | E [auth A], G [auth D] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 Å
- R-Value Free: 0.248
- R-Value Work: 0.186
- R-Value Observed: 0.190
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.367 | α = 90 |
| b = 115.047 | β = 90 |
| c = 73.596 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELXS | phasing |
| MLPHARE | phasing |
| RESOLVE | model building |
| SOLVE | phasing |
| PHENIX | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| RESOLVE | phasing |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2010-07-28 Deposition Author(s): Kim, Y., Xu, X., Cui, H., Chin, S., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-07-28
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
