Download MendeleyX-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
Osipiuk, J., Maltseva, N., Peterson, S., Anderson, W.F., Joachimiak, A.To be published.
3N4J
Putative RNA methyltransferase from Yersinia pestis
- PDB DOI: https://doi.org/10.2210/pdb3N4J/pdb
- Classification: TRANSFERASE
- Organism(s): Yersinia pestis CO92
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-05-21 Released: 2010-06-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.186
- R-Value Work: 0.143
- R-Value Observed: 0.145
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RNA methyltransferase | 165 | Yersinia pestis CO92 | Mutation(s): 0 Gene Names: cspR, YPO0071, YP_0071 |  | |
UniProt | |||||
Find proteins for Q74Y93 (Yersinia pestis) Explore Q74Y93 Go to UniProtKB: Q74Y93 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q74Y93 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.186
- R-Value Work: 0.143
- R-Value Observed: 0.145
- Space Group: P 31 2 1
- Diffraction Data: https://doi.org/10.18430/M33N4J
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.719 | α = 90 |
| b = 79.719 | β = 90 |
| c = 44.638 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| MOLREP | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2010-06-23 Deposition Author(s): Osipiuk, J., Maltseva, N., Peterson, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2010-06-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
