Download MendeleyCrystal Structure of Geranylgeranyl Pyrophosphate Synthase from Lactobacillus Brevis
Patskovsky, Y., Toro, R., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3N3D
Crystal structure of geranylgeranyl pyrophosphate synthase from lactobacillus brevis atcc 367
- PDB DOI: https://doi.org/10.2210/pdb3N3D/pdb
- Classification: TRANSFERASE
- Organism(s): Levilactobacillus brevis ATCC 367
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-05-19 Released: 2010-06-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.267
- R-Value Work: 0.234
- R-Value Observed: 0.235
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Geranylgeranyl pyrophosphate synthase | 335 | Levilactobacillus brevis ATCC 367 | Mutation(s): 0 Gene Names: LVIS_1638 |  | |
UniProt | |||||
Find proteins for Q03Q08 (Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947)) Explore Q03Q08 Go to UniProtKB: Q03Q08 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q03Q08 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A], F [auth A], G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.267
- R-Value Work: 0.234
- R-Value Observed: 0.235
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 111.562 | α = 90 |
| b = 111.562 | β = 90 |
| c = 198.497 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2010-06-02 Deposition Author(s): Patskovsky, Y., Toro, R., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York Structural GenomiX Research Consortium (NYSGXRC), New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-06-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-01-24
Changes: Structure summary - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
