Download MendeleyCrystal Structure of fluorescein-labeled Class A -lactamase PenP
Zhao, Y.X., Leung, Y.C., Wong, W.T.To be published.
3M2J
Crystal Structure of fluorescein-labeled Class A -lactamase PenP
- PDB DOI: https://doi.org/10.2210/pdb3M2J/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus licheniformis
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2010-03-07 Released: 2011-03-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.273
- R-Value Work: 0.209
- R-Value Observed: 0.212
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-lactamase | 257 | Bacillus licheniformis | Mutation(s): 1 Gene Names: penP EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for P00808 (Bacillus licheniformis) Explore P00808 Go to UniProtKB: P00808 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00808 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| F5M Query on F5M | D [auth A] | 5-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)benzoic acid C24 H13 N O7 HFBMFFXWMZRDIY-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | C [auth A], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.273
- R-Value Work: 0.209
- R-Value Observed: 0.212
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.354 | α = 90 |
| b = 92.34 | β = 104.84 |
| c = 66.415 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CrystalClear | data collection |
| REFMAC | refinement |
| CrystalClear | data reduction |
| CrystalClear | data scaling |
Entry History
Deposition Data
- Released Date: 2011-03-16 Deposition Author(s): Zhao, Y.X., Leung, Y.C., Wong, W.T.
Revision History (Full details and data files)
- Version 1.0: 2011-03-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
