Download MendeleyCrystal structure of dipicolinate synthase subunit B from Bacillus halodurans C
Nocek, B., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
3LQK
Crystal structure of dipicolinate synthase subunit B from Bacillus halodurans C
- PDB DOI: https://doi.org/10.2210/pdb3LQK/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Halalkalibacterium halodurans
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-02-09 Released: 2010-03-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.213
- R-Value Work: 0.167
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dipicolinate synthase subunit B | 201 | Halalkalibacterium halodurans | Mutation(s): 0 Gene Names: spoVFB, BH2402 |  | |
UniProt | |||||
Find proteins for Q9KA88 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9KA88 Go to UniProtKB: Q9KA88 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KA88 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A], C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.213
- R-Value Work: 0.167
- R-Value Observed: 0.169
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 110.185 | α = 90 |
| b = 110.185 | β = 90 |
| c = 71.35 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| DM | model building |
| SHELX | model building |
| MLPHARE | phasing |
| Coot | model building |
| ARP/wARP | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2010-03-23 Deposition Author(s): Nocek, B., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-03-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
