Download MendeleyCrystal structure of phosphoribosylamine-glycine ligase from Ehrlichia chaffeensis
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Sankaran, B., Davies, D., Staker, B.To be published.
3LP8
Crystal structure of phosphoribosylamine-glycine ligase from Ehrlichia chaffeensis
- PDB DOI: https://doi.org/10.2210/pdb3LP8/pdb
- Classification: LIGASE
- Organism(s): Ehrlichia chaffeensis str. Arkansas
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-02-04 Released: 2010-02-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.215
- R-Value Work: 0.170
- R-Value Observed: 0.172
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoribosylamine-glycine ligase | 442 | Ehrlichia chaffeensis str. Arkansas | Mutation(s): 0 Gene Names: purD, ECH_1006 EC: 6.3.4.13 |  | |
UniProt | |||||
Find proteins for Q2GFJ0 (Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas)) Explore Q2GFJ0 Go to UniProtKB: Q2GFJ0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2GFJ0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| UNX Query on UNX | C [auth A], D [auth A], E [auth A], F [auth A], G [auth A] | UNKNOWN ATOM OR ION X |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.215
- R-Value Work: 0.170
- R-Value Observed: 0.172
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M33LP8
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.85 | α = 90 |
| b = 74.16 | β = 90 |
| c = 107.29 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2010-02-23 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2010-02-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
