Download MendeleyCrystal structure of PROTEIN OF UNKNOWN FUNCTION (NP_070038.1) from ARCHAEOGLOBUS FULGIDUS at 1.89 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3LOT
Crystal structure of PROTEIN OF UNKNOWN FUNCTION (NP_070038.1) from ARCHAEOGLOBUS FULGIDUS at 1.89 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3LOT/pdb
- Classification: structure genomics, unknown function
- Organism(s): Archaeoglobus fulgidus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-02-04 Released: 2010-02-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 Å
- R-Value Free: 0.206
- R-Value Work: 0.156
- R-Value Observed: 0.159
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein | 314 | Archaeoglobus fulgidus | Mutation(s): 0 Gene Names: AF_1210 |  | |
UniProt | |||||
Find proteins for O29058 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O29058 Go to UniProtKB: O29058 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O29058 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | E [auth A], I [auth B], L [auth C], P [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | O [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| UNL Query on UNL | F [auth A] G [auth A] H [auth A] J [auth B] K [auth B] | Unknown ligand QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 Å
- R-Value Free: 0.206
- R-Value Work: 0.156
- R-Value Observed: 0.159
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M33LOT
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.786 | α = 90 |
| b = 103.079 | β = 90 |
| c = 156.55 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHELX | phasing |
| MolProbity | model building |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2010-02-23 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-02-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2012-02-22
Changes: Structure summary - Version 1.3: 2017-11-01
Changes: Refinement description - Version 1.4: 2019-07-17
Changes: Data collection, Derived calculations, Refinement description - Version 1.5: 2023-02-01
Changes: Database references, Derived calculations
