Download MendeleyCrystal structure of guanylate kinase from Anaplasma phagocytophilum
Abendroth, J., Sankaran, B., Davies, D., Staker, B.To be published.
3LNC
Crystal structure of guanylate kinase from Anaplasma phagocytophilum
- PDB DOI: https://doi.org/10.2210/pdb3LNC/pdb
- Classification: TRANSFERASE
- Organism(s): Anaplasma phagocytophilum str. HZ
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-02-02 Released: 2010-02-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.244
- R-Value Work: 0.209
- R-Value Observed: 0.210
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanylate kinase | 231 | Anaplasma phagocytophilum str. HZ | Mutation(s): 0 Gene Names: gmk, APH_0170 EC: 2.7.4.8 |  | |
UniProt | |||||
Find proteins for Q2GLF7 (Anaplasma phagocytophilum (strain HZ)) Explore Q2GLF7 Go to UniProtKB: Q2GLF7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2GLF7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 5GP Query on 5GP | C [auth A], D [auth B] | GUANOSINE-5'-MONOPHOSPHATE C10 H14 N5 O8 P RQFCJASXJCIDSX-UUOKFMHZSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.244
- R-Value Work: 0.209
- R-Value Observed: 0.210
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M33LNC
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.53 | α = 90 |
| b = 76.58 | β = 90 |
| c = 103.66 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BOS | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2010-02-16 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2010-02-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
