Download MendeleyCrystal Structure of Geranyltransferase from Helicobacter Pylori
Patskovsky, Y., Toro, R., Rutter, M., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3LLW
Crystal structure of geranyltransferase from helicobacter pylori 26695
- PDB DOI: https://doi.org/10.2210/pdb3LLW/pdb
- Classification: TRANSFERASE
- Organism(s): Helicobacter pylori 26695
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-01-29 Released: 2010-03-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.252
- R-Value Work: 0.196
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Geranyltranstransferase (IspA) | 311 | Helicobacter pylori 26695 | Mutation(s): 0 Gene Names: HP_0929 |  | |
UniProt | |||||
Find proteins for O25583 (Helicobacter pylori (strain ATCC 700392 / 26695)) Explore O25583 Go to UniProtKB: O25583 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O25583 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A] F [auth A] G [auth B] H [auth B] I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.252
- R-Value Work: 0.196
- R-Value Observed: 0.197
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.04 | α = 90 |
| b = 123.844 | β = 92.67 |
| c = 111.617 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| PHENIX | model building |
| RESOLVE | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
| PHENIX | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2010-03-31 Deposition Author(s): Patskovsky, Y., Toro, R., Rutter, M., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-03-31
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-11-21
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-21
Changes: Data collection, Database references
