3LIO
X-ray structure of the iron superoxide dismutase from pseudoalteromonas haloplanktis (crystal form I)
- PDB DOI: https://doi.org/10.2210/pdb3LIO/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Pseudoalteromonas translucida TAC125
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-01-25 Released: 2010-09-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.202
- R-Value Work: 0.185
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| iron superoxide dismutase | 192 | Pseudoalteromonas translucida TAC125 | Mutation(s): 0 Gene Names: PSHAa1215, sodB EC: 1.15.1.1 |  | |
UniProt | |||||
Find proteins for P84612 (Pseudoalteromonas translucida (strain TAC 125)) Explore P84612 Go to UniProtKB: P84612 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P84612 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FE Query on FE | E [auth A], F [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900006 Query on PRD_900006 | C, D | trehalose | Oligosaccharide / Nutrient |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.202
- R-Value Work: 0.185
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.866 | α = 90 |
| b = 103.714 | β = 108.63 |
| c = 50.242 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| AMoRE | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-09-08 Deposition Author(s): Merlino, A., Russo Krauss, I., Rossi, B., Conte, M., Vergara, A., Sica, F.
Revision History (Full details and data files)
- Version 1.0: 2010-09-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-09-06
Changes: Data collection, Database references, Refinement description, Structure summary
