Download MendeleyCrystal structure of inorganic phosphatase from anaplasma phagocytophilum at 1.75a resolution
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Davies, D., Staker, B.To be published.
3LD3
Crystal structure of inorganic phosphatase from anaplasma phagocytophilum at 1.75a resolution
- PDB DOI: https://doi.org/10.2210/pdb3LD3/pdb
- Classification: HYDROLASE
- Organism(s): Anaplasma phagocytophilum str. HZ
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-01-12 Released: 2010-03-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.182
- R-Value Work: 0.160
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Inorganic pyrophosphatase | 199 | Anaplasma phagocytophilum str. HZ | Mutation(s): 0 Gene Names: ppa, APH_1101 EC: 3.6.1.1 |  | |
UniProt | |||||
Find proteins for Q2GJ02 (Anaplasma phagocytophilum (strain HZ)) Explore Q2GJ02 Go to UniProtKB: Q2GJ02 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2GJ02 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth A], D [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.182
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: I 21 3
- Diffraction Data: https://doi.org/10.18430/M33LD3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 135.38 | α = 90 |
| b = 135.38 | β = 90 |
| c = 135.38 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BOS | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2010-03-31 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2010-03-31
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2018-01-24
Changes: Structure summary - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
