Download MendeleyThe crystal structure of a functionally unknown protein RPA4178 from Rhodopseudomonas palustris CGA009
Tan, K., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
3LAG
The crystal structure of a functionally unknown protein RPA4178 from Rhodopseudomonas palustris CGA009
- PDB DOI: https://doi.org/10.2210/pdb3LAG/pdb
- Entry: 3LAG supersedes: 2OZI
- Classification: structural genomics, unknown function
- Organism(s): Rhodopseudomonas palustris CGA009
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2010-01-06 Released: 2010-01-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.221
- R-Value Work: 0.185
- R-Value Observed: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein RPA4178 | 98 | Rhodopseudomonas palustris CGA009 | Mutation(s): 0 Gene Names: PA4178 |  | |
UniProt | |||||
Find proteins for Q6N272 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore Q6N272 Go to UniProtKB: Q6N272 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6N272 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | C [auth A], F [auth B] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | E [auth A], G [auth B], H [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| CA Query on CA | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.221
- R-Value Work: 0.185
- R-Value Observed: 0.187
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.871 | α = 90 |
| b = 59.243 | β = 90 |
| c = 65.38 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2010-01-19 Deposition Author(s): Tan, K., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
- This entry supersedes: 2OZI
Revision History (Full details and data files)
- Version 1.0: 2010-01-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
