3KWM
Crystal structure of ribose-5-isomerase A
- PDB DOI: https://doi.org/10.2210/pdb3KWM/pdb
- Classification: ISOMERASE
- Organism(s): Francisella tularensis subsp. tularensis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-12-01 Released: 2010-01-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.221
- R-Value Work: 0.170
- R-Value Observed: 0.173
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribose-5-phosphate isomerase A | 224 | Francisella tularensis subsp. tularensis | Mutation(s): 0 Gene Names: FTT1208, FTW_1255, rpiA EC: 5.3.1.6 |  | |
UniProt | |||||
Find proteins for Q5NFM5 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NFM5 Go to UniProtKB: Q5NFM5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5NFM5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | I [auth C], J [auth C], K [auth C], L [auth C] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | F [auth A], H [auth B], N [auth D] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| 3GR Query on 3GR | M [auth D] | D-Glyceraldehyde C3 H6 O3 MNQZXJOMYWMBOU-VKHMYHEASA-N |  | ||
| NA Query on NA | E [auth A], G [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.221
- R-Value Work: 0.170
- R-Value Observed: 0.173
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 182.36 | α = 90 |
| b = 73.085 | β = 90 |
| c = 75.303 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-01-05 Deposition Author(s): Orlikowska, M., Rostankowski, R., Nakka, C., Hattne, J., Grimshaw, S., Borek, D., Otwinowski, Z., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2010-01-05
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 2.0: 2020-07-08
Changes: Advisory, Atomic model, Derived calculations, Structure summary - Version 2.1: 2023-09-06
Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description
