Download MendeleyCrystal Structure of Putative Sugar-Binding Domain of Transcriptional Repressor from Vibrio fischeri
Kim, Y., Marshall, N., Bearden, J., Joachimiak, A.To be published.
3KV1
Crystal Structure of Putative Sugar-Binding Domain of Transcriptional Repressor from Vibrio fischeri
- PDB DOI: https://doi.org/10.2210/pdb3KV1/pdb
- Classification: TRANSCRIPTION
- Organism(s): Aliivibrio fischeri ES114
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-11-28 Released: 2009-12-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.201
- R-Value Work: 0.165
- R-Value Observed: 0.168
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional repressor | 267 | Aliivibrio fischeri ES114 | Mutation(s): 0 Gene Names: lsrR, VF_A0400 EC: 2.7.1.69 |  | |
UniProt | |||||
Find proteins for Q5E0H6 (Aliivibrio fischeri (strain ATCC 700601 / ES114)) Explore Q5E0H6 Go to UniProtKB: Q5E0H6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5E0H6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.201
- R-Value Work: 0.165
- R-Value Observed: 0.168
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 129.382 | α = 90 |
| b = 43.474 | β = 104.15 |
| c = 47.536 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELXS | phasing |
| MLPHARE | phasing |
| RESOLVE | model building |
| SOLVE | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2009-12-22 Deposition Author(s): Kim, Y., Marshall, N., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-12-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
