Download MendeleyCrystal Structure of Probable Methyltransferase SpoU from Bordetella pertussis Tohama I
Kim, Y., Tesar, C., Keigher, L., Joachimiak, A.To be published.
3KTY
Crystal Structure of Probable Methyltransferase from Bordetella pertussis Tohama I
- PDB DOI: https://doi.org/10.2210/pdb3KTY/pdb
- Classification: TRANSFERASE
- Organism(s): Bordetella pertussis
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2009-11-26 Released: 2009-12-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.240
- R-Value Work: 0.187
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable methyltransferase | 173 | Bordetella pertussis | Mutation(s): 0 Gene Names: BP1901 |  | |
UniProt | |||||
Find proteins for Q7VXA3 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)) Explore Q7VXA3 Go to UniProtKB: Q7VXA3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7VXA3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth B], G [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth B], F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.240
- R-Value Work: 0.187
- R-Value Observed: 0.190
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.48 | α = 90 |
| b = 69.514 | β = 95.16 |
| c = 174.802 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELXS | phasing |
| MLPHARE | phasing |
| RESOLVE | model building |
| SOLVE | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2009-12-08 Deposition Author(s): Kim, Y., Tesar, C., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-12-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance
