Download MendeleyCrystal structure of apo transketolase from Francisella tularensis
Anderson, S.M., Wawrzak, Z., Skarina, T., Gordon, E., Kwon, K., Savchenko, A., Anderson, W.F.To be published.
3KOM
Crystal structure of apo transketolase from Francisella tularensis
- PDB DOI: https://doi.org/10.2210/pdb3KOM/pdb
- Classification: TRANSFERASE
- Organism(s): Francisella tularensis subsp. tularensis SCHU S4
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2009-11-13 Released: 2009-12-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.199
- R-Value Work: 0.163
- R-Value Observed: 0.165
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transketolase | 663 | Francisella tularensis subsp. tularensis SCHU S4 | Mutation(s): 1 Gene Names: tktA, FTT1369c, FTT_1369c EC: 2.2.1.1 |  | |
UniProt | |||||
Find proteins for Q5NF74 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NF74 Go to UniProtKB: Q5NF74 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5NF74 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
| OCS Query on OCS | A, B | L-PEPTIDE LINKING | C3 H7 N O5 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.199
- R-Value Work: 0.163
- R-Value Observed: 0.165
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M33KOM
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.49 | α = 90 |
| b = 109.29 | β = 90 |
| c = 128.56 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| BLU-MAX | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CRANK | phasing |
Entry History
Deposition Data
- Released Date: 2009-12-01 Deposition Author(s): Anderson, S.M., Wawrzak, Z., Skarina, T., Gordon, E., Kwon, K., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2009-12-01
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2011-12-14
Changes: Structure summary - Version 1.3: 2017-11-01
Changes: Refinement description - Version 1.4: 2021-10-13
Changes: Database references, Derived calculations
