3KF3
Structure of fructofuranosidase from Schwanniomyces occidentalis complexed with fructose
- PDB DOI: https://doi.org/10.2210/pdb3KF3/pdb
- Classification: HYDROLASE
- Organism(s): Schwanniomyces occidentalis
- Mutation(s): No
- Deposited: 2009-10-27 Released: 2010-02-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.261
- R-Value Work: 0.220
- R-Value Observed: 0.222
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Invertase | 509 | Schwanniomyces occidentalis | Mutation(s): 0 EC: 3.2.1.26 |  | |
UniProt | |||||
Find proteins for P24133 (Schwanniomyces occidentalis) Explore P24133 Go to UniProtKB: P24133 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P24133 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | D [auth A] E [auth A] F [auth A] G [auth A] I [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| FRU Query on FRU | C [auth A], H [auth B] | beta-D-fructofuranose C6 H12 O6 RFSUNEUAIZKAJO-ARQDHWQXSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.261
- R-Value Work: 0.220
- R-Value Observed: 0.222
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.87 | α = 90 |
| b = 92.27 | β = 104.81 |
| c = 116.28 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| MOSFLM | data reduction |
Entry History
Deposition Data
- Released Date: 2010-02-23 Deposition Author(s): Sanz-Aparicio, J., Polo, A.
Revision History (Full details and data files)
- Version 1.0: 2010-02-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary
