Download MendeleyThe crystal structure of thioredoxin protein from Geobacter metallireducens
Zhang, Z., Burley, S.K., Swaminathan, S.To be published.
3KCM
The crystal structure of thioredoxin protein from Geobacter metallireducens
- PDB DOI: https://doi.org/10.2210/pdb3KCM/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Geobacter metallireducens GS-15
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-10-21 Released: 2009-11-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.270
- R-Value Work: 0.214
- R-Value Observed: 0.217
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thioredoxin family protein | 154 | Geobacter metallireducens GS-15 | Mutation(s): 0 Gene Names: 11211k2, Gmet_2452 |  | |
UniProt | |||||
Find proteins for Q39SU7 (Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)) Explore Q39SU7 Go to UniProtKB: Q39SU7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q39SU7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | G [auth A] H [auth B] I [auth C] J [auth D] K [auth E] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.270
- R-Value Work: 0.214
- R-Value Observed: 0.217
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.986 | α = 100.66 |
| b = 74.555 | β = 109.05 |
| c = 82.41 | γ = 99.07 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-11-10 Deposition Author(s): Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-11-10
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Refinement description - Version 1.4: 2023-11-22
Changes: Data collection
