Download MendeleyCrystal structure of LacI Transcriptional regulator from Rhodococcus species.
Damodhran, L., Burley, S.K., Swaminathan, S.To be published.
3K9C
Crystal structure of LacI Transcriptional regulator from Rhodococcus species.
- PDB DOI: https://doi.org/10.2210/pdb3K9C/pdb
- Classification: transcription regulator
- Organism(s): Rhodococcus jostii RHA1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-10-15 Released: 2009-11-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.14 Å
- R-Value Free: 0.243
- R-Value Work: 0.209
- R-Value Observed: 0.209
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator, LacI family protein | 289 | Rhodococcus jostii RHA1 | Mutation(s): 0 Gene Names: RHA1_ro05266 |  | |
UniProt | |||||
Find proteins for Q0S5Y9 (Rhodococcus jostii (strain RHA1)) Explore Q0S5Y9 Go to UniProtKB: Q0S5Y9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0S5Y9 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.14 Å
- R-Value Free: 0.243
- R-Value Work: 0.209
- R-Value Observed: 0.209
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.435 | α = 90 |
| b = 100.543 | β = 90 |
| c = 106.433 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHARP | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-11-03 Deposition Author(s): Damodharan, L., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-11-03
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
