Download MendeleyStructure of X. oryzae pv. oryzae KACC10331, Xoo0880(fabD) complexed with glycerol
Natarajan, S., Jung, J.W., Kang, L.W.To be published.
3K89
Structure of X. oryzae pv. oryzae KACC10331, Xoo0880(fabD) complexed with glycerol
- PDB DOI: https://doi.org/10.2210/pdb3K89/pdb
- Classification: TRANSFERASE
- Organism(s): Xanthomonas oryzae pv. oryzae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-10-14 Released: 2009-10-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.210
- R-Value Work: 0.179
- R-Value Observed: 0.180
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Malonyl CoA-ACP transacylase | 314 | Xanthomonas oryzae pv. oryzae | Mutation(s): 0 Gene Names: fabD, XOO0880 |  | |
UniProt | |||||
Find proteins for Q5H4I7 (Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)) Explore Q5H4I7 Go to UniProtKB: Q5H4I7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5H4I7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.210
- R-Value Work: 0.179
- R-Value Observed: 0.180
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.361 | α = 90 |
| b = 74.095 | β = 90 |
| c = 98.617 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2009-10-27 Deposition Author(s): Natarajan, S., Jung, J.W., Kang, L.W.
Revision History (Full details and data files)
- Version 1.0: 2009-10-27
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
