Download MendeleyHuman dipeptidyl peptidase DPP7
Dobrovetsky, E., Dong, A., Seitova, A., Crombett, L., Paganon, S., Cossar, D., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Weigelt, J., Hassel, A., Shewchuk, L., Bochkarev, A.To be published.
3JYH
Human dipeptidyl peptidase DPP7
- PDB DOI: https://doi.org/10.2210/pdb3JYH/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2009-09-21 Released: 2009-10-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.19 Å
- R-Value Free: 0.222
- R-Value Work: 0.180
- R-Value Observed: 0.182
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dipeptidyl-peptidase 2 | 469 | Homo sapiens | Mutation(s): 0 Gene Names: DPP2, DPP7, QPP EC: 3.4.14.2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UHL4 (Homo sapiens) Explore Q9UHL4 Go to UniProtKB: Q9UHL4 | |||||
PHAROS: Q9UHL4 GTEx: ENSG00000176978 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UHL4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | M [auth A] N [auth A] O [auth B] P [auth C] Q [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.19 Å
- R-Value Free: 0.222
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.216 | α = 90 |
| b = 130.215 | β = 102.36 |
| c = 124.436 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| DENZO | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-10-13 Deposition Author(s): Dobrovetsky, E., Dong, A., Seitova, A., Crombett, L., Paganon, S., Cossar, D., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Weigelt, J., Hassel, A., Shewchuk, L., Bochkarev, A., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2009-10-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary
