Download MendeleyCrystal structure of LACI family protein from Corynebacterium glutamicum
Patskovsky, Y., Ramagopal, U., Toro, R., Foti, R., Freeman, J., Do, J., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3JVD
Crystal structure of putative transcription regulation repressor (LACI family) FROM Corynebacterium glutamicum
- PDB DOI: https://doi.org/10.2210/pdb3JVD/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Corynebacterium glutamicum
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-09-16 Released: 2009-09-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.284
- R-Value Work: 0.224
- R-Value Observed: 0.226
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulators | 333 | Corynebacterium glutamicum | Mutation(s): 0 Gene Names: Cgl2044, ycza |  | |
UniProt | |||||
Find proteins for Q8NNY3 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)) Explore Q8NNY3 Go to UniProtKB: Q8NNY3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8NNY3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.284
- R-Value Work: 0.224
- R-Value Observed: 0.226
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 91.97 | α = 90 |
| b = 91.97 | β = 90 |
| c = 285.453 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2009-09-22 Deposition Author(s): Patskovsky, Y., Ramagopal, U., Toro, R., Foti, R., Freeman, J., Do, J., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-09-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2018-11-21
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-21
Changes: Data collection, Database references
