Download MendeleyCrystal structure of Iron superoxide dismutase from Anaplasma phagocytophilum
Edwards, T.E., Staker, B.L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
3JS4
Crystal structure of iron superoxide dismutase from Anaplasma phagocytophilum
- PDB DOI: https://doi.org/10.2210/pdb3JS4/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Anaplasma phagocytophilum str. HZ
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-09-09 Released: 2009-09-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.206
- R-Value Work: 0.167
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Superoxide dismutase | 227 | Anaplasma phagocytophilum str. HZ | Mutation(s): 0 Gene Names: sodB, APH_0371 EC: 1.15.1.1 |  | |
UniProt | |||||
Find proteins for Q2GKX4 (Anaplasma phagocytophilum (strain HZ)) Explore Q2GKX4 Go to UniProtKB: Q2GKX4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2GKX4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FE Query on FE | E [auth A], G [auth B], I [auth C], K [auth D] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| NA Query on NA | F [auth A], H [auth B], J [auth C], L [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.206
- R-Value Work: 0.167
- R-Value Observed: 0.169
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.66 | α = 102.09 |
| b = 66.6 | β = 104.83 |
| c = 85.44 | γ = 88.58 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2009-09-22 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2009-09-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
