Download MendeleyCrystal structure of Leucyl Aminopeptidase (pepA) from Xoo0834,Xanthomonas oryzae pv. oryzae KACC10331
Natarajan, S., Huynh, K.-H., Kang, L.W.To be published.
3JRU
Crystal structure of Leucyl Aminopeptidase (pepA) from Xoo0834,Xanthomonas oryzae pv. oryzae KACC10331
- PDB DOI: https://doi.org/10.2210/pdb3JRU/pdb
- Classification: HYDROLASE
- Organism(s): Xanthomonas oryzae pv. oryzae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-09-08 Released: 2010-09-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.215
- R-Value Work: 0.146
- R-Value Observed: 0.148
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable cytosol aminopeptidase | A [auth B], B [auth A] | 490 | Xanthomonas oryzae pv. oryzae | Mutation(s): 0 Gene Names: pepA, XOO0834 EC: 3.4.11.1 |  |
UniProt | |||||
Find proteins for Q5H4N2 (Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)) Explore Q5H4N2 Go to UniProtKB: Q5H4N2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5H4N2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | D [auth B], E [auth B], H [auth A], I [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CO3 Query on CO3 | C [auth B], G [auth A] | CARBONATE ION C O3 BVKZGUZCCUSVTD-UHFFFAOYSA-L |  | ||
| CA Query on CA | F [auth B], J [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.215
- R-Value Work: 0.146
- R-Value Observed: 0.148
- Space Group: P 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 152.126 | α = 90 |
| b = 152.126 | β = 90 |
| c = 152.126 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PROTEUM PLUS | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-09-08 Deposition Author(s): Natarajan, S., Huynh, K.-H., Kang, L.W.
Revision History (Full details and data files)
- Version 1.0: 2010-09-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
