Download MendeleyCrystal structure of Putative fructosamine-3-kinase (YP_719053.1) from HAEMOPHILUS SOMNUS 129PT at 2.32 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3JR1
Crystal structure of Putative fructosamine-3-kinase (YP_719053.1) from HAEMOPHILUS SOMNUS 129PT at 2.32 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3JR1/pdb
- Classification: TRANSFERASE
- Organism(s): Histophilus somni 129PT
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-09-08 Released: 2009-09-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.244
- R-Value Work: 0.199
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative fructosamine-3-kinase | 312 | Histophilus somni 129PT | Mutation(s): 0 Gene Names: HS_0843, YP_719053.1 |  | |
UniProt | |||||
Find proteins for Q0I3M3 (Histophilus somni (strain 129Pt)) Explore Q0I3M3 Go to UniProtKB: Q0I3M3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0I3M3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | D [auth A], E [auth A], G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| UNL Query on UNL | C [auth A], F [auth B] | Unknown ligand LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.244
- R-Value Work: 0.199
- R-Value Observed: 0.202
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M33JR1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 137.308 | α = 90 |
| b = 85.627 | β = 132.92 |
| c = 99.009 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SOLVE | phasing |
| MolProbity | model building |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2009-09-15 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-09-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description
