3J6B

Structure of the yeast mitochondrial large ribosomal subunit

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history. 


Literature

Structure of the yeast mitochondrial large ribosomal subunit.

Amunts, A., Brown, A., Bai, X.C., Llacer, J.L., Hussain, T., Emsley, P., Long, F., Murshudov, G., Scheres, S.H., Ramakrishnan, V.

(2014) Science 343: 1485-1489

  • DOI: https://doi.org/10.1126/science.1249410
  • Primary Citation of Related Structures:  
    3J6B

  • PubMed Abstract: 

    Mitochondria have specialized ribosomes that have diverged from their bacterial and cytoplasmic counterparts. We have solved the structure of the yeast mitoribosomal large subunit using single-particle cryo-electron microscopy. The resolution of 3.2 angstroms enabled a nearly complete atomic model to be built de novo and refined, including 39 proteins, 13 of which are unique to mitochondria, as well as expansion segments of mitoribosomal RNA. The structure reveals a new exit tunnel path and architecture, unique elements of the E site, and a putative membrane docking site.

    • Organizational Affiliation: 

    MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.


Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein RML2, mitochondrial393Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P32611 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32611 
Go to UniProtKB:  P32611
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32611
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L9, mitochondrial269Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P31334 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P31334 
Go to UniProtKB:  P31334
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP31334
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein YmL6, mitochondrial286Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P51998 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P51998 
Go to UniProtKB:  P51998
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP51998
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L7, mitochondrial292Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36519 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36519 
Go to UniProtKB:  P36519
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36519
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L6, mitochondrial214Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P32904 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32904 
Go to UniProtKB:  P32904
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32904
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L50, mitochondrial139Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P53724 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53724 
Go to UniProtKB:  P53724
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53724
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L23, mitochondrial163Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q12487 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12487 
Go to UniProtKB:  Q12487
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12487
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L38, mitochondrial138Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P35996 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P35996 
Go to UniProtKB:  P35996
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35996
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L10, mitochondrial322Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36520 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36520 
Go to UniProtKB:  P36520
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36520
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L16, mitochondrial232Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P38064 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38064 
Go to UniProtKB:  P38064
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP38064
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L8, mitochondrial238Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P22353 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P22353 
Go to UniProtKB:  P22353
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22353
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein IMG1, mitochondrial169Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P25626 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P25626 
Go to UniProtKB:  P25626
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25626
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L49, mitochondrial161Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P40858 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40858 
Go to UniProtKB:  P40858
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40858
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L22, mitochondrial309Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P53881 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53881 
Go to UniProtKB:  P53881
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53881
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L41, mitochondrial263Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P32387 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32387 
Go to UniProtKB:  P32387
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32387
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L40, mitochondrial297Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36534 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36534 
Go to UniProtKB:  P36534
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36534
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L2, mitochondrial371Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P12687 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P12687 
Go to UniProtKB:  P12687
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12687
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L24, mitochondrial258Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36525 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36525 
Go to UniProtKB:  P36525
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36525
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L4, mitochondrial319Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36517 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36517 
Go to UniProtKB:  P36517
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36517
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L33, mitochondrial86Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P20084 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P20084 
Go to UniProtKB:  P20084
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP20084
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L36, mitochondrial177Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36531 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36531 
Go to UniProtKB:  P36531
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36531
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L32, mitochondrial183Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P25348 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P25348 
Go to UniProtKB:  P25348
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25348
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L39, mitochondrial70Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36533 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36533 
Go to UniProtKB:  P36533
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36533
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L34, mitochondrial105Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q04598 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q04598 
Go to UniProtKB:  Q04598
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04598
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
mitochondrial ribosomal protein YNL122C115Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P53921 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53921 
Go to UniProtKB:  P53921
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53921
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein RTC6, mitochondrialAA [auth 0]93Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for O14464 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore O14464 
Go to UniProtKB:  O14464
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14464
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L35, mitochondrialBA [auth 1]367Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q06678 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06678 
Go to UniProtKB:  Q06678
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06678
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L28, mitochondrialCA [auth 2]147Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36527 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36527 
Go to UniProtKB:  P36527
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36527
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L27, mitochondrialDA [auth 3]146Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36526 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36526 
Go to UniProtKB:  P36526
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36526
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L51, mitochondrialEA [auth 4]140Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q06090 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06090 
Go to UniProtKB:  Q06090
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06090
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L3, mitochondrialFA [auth 5]390Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36516 
Go to UniProtKB:  P36516
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36516
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L17, mitochondrialGA [auth 6]281Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36528 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36528 
Go to UniProtKB:  P36528
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36528
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein IMG2, mitochondrialHA [auth 7]146Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P25642 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P25642 
Go to UniProtKB:  P25642
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25642
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L13, mitochondrialIA [auth 8]264Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q02204 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q02204 
Go to UniProtKB:  Q02204
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02204
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L15, mitochondrialJA [auth 9]253Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P36523 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36523 
Go to UniProtKB:  P36523
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36523
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L20, mitochondrialKA [auth a]195Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P22354 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P22354 
Go to UniProtKB:  P22354
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22354
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L25, mitochondrialLA [auth b]157Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P23369 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P23369 
Go to UniProtKB:  P23369
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP23369
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
54S ribosomal protein L31, mitochondrialMA [auth c]131Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P14063 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P14063 
Go to UniProtKB:  P14063
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP14063
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial homologous recombination protein 1NA [auth d]226Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q06630 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06630 
Go to UniProtKB:  Q06630
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06630
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains LengthOrganismImage
21S ribosomal RNA3,296Saccharomyces cerevisiae
Sequence Annotations
Expand
  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 41
MoleculeChains LengthOrganismImage
E-site tRNAOA [auth e]20Saccharomyces cerevisiae
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
WE [auth W],
XE [auth 0]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AB [auth A]
AC [auth A]
AD [auth A]
AE [auth A]
BB [auth A]
AB [auth A],
AC [auth A],
AD [auth A],
AE [auth A],
BB [auth A],
BC [auth A],
BD [auth A],
BE [auth A],
CB [auth A],
CC [auth A],
CD [auth A],
CE [auth A],
DB [auth A],
DC [auth A],
DD [auth A],
DE [auth A],
EB [auth A],
EC [auth A],
ED [auth A],
EE [auth A],
FB [auth A],
FC [auth A],
FD [auth A],
FE [auth A],
GB [auth A],
GC [auth A],
GD [auth A],
GE [auth A],
HB [auth A],
HC [auth A],
HD [auth A],
HE [auth A],
IB [auth A],
IC [auth A],
ID [auth A],
IE [auth A],
JB [auth A],
JC [auth A],
JD [auth A],
JE [auth A],
KB [auth A],
KC [auth A],
KD [auth A],
KE [auth A],
LB [auth A],
LC [auth A],
LD [auth A],
LE [auth A],
MB [auth A],
MC [auth A],
MD [auth A],
ME [auth A],
NB [auth A],
NC [auth A],
ND [auth A],
NE [auth A],
OB [auth A],
OC [auth A],
OD [auth A],
OE [auth A],
PA [auth A],
PB [auth A],
PC [auth A],
PD [auth A],
PE [auth A],
QA [auth A],
QB [auth A],
QC [auth A],
QD [auth A],
QE [auth A],
RA [auth A],
RB [auth A],
RC [auth A],
RD [auth A],
RE [auth A],
SA [auth A],
SB [auth A],
SC [auth A],
SD [auth A],
SE [auth A],
TA [auth A],
TB [auth A],
TC [auth A],
TD [auth A],
TE [auth A],
UA [auth A],
UB [auth A],
UC [auth A],
UD [auth A],
VA [auth A],
VB [auth A],
VC [auth A],
VD [auth A],
VE [auth N],
WA [auth A],
WB [auth A],
WC [auth A],
WD [auth A],
XA [auth A],
XB [auth A],
XC [auth A],
XD [auth A],
YA [auth A],
YB [auth A],
YC [auth A],
YD [auth A],
ZA [auth A],
ZB [auth A],
ZC [auth A],
ZD [auth A]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
NA
Query on NA
Download Ideal Coordinates CCD File 
UE [auth B]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-04-09
    Type: Initial release
  • Version 1.1: 2014-07-09
    Changes: Other
  • Version 1.2: 2014-12-10
    Changes: Other
  • Version 1.3: 2014-12-17
    Changes: Other
  • Version 1.4: 2018-07-18
    Changes: Data collection
  • Version 1.5: 2024-02-21
    Changes: Data collection, Database references, Derived calculations