POP-OUT | CLOSE
 
Structure of the D. melanogaster 60S ribosomal proteins
3J39
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3J38   3J39   3J3C   3J3E  
  Download All Files   

The complete entry has been assigned PDB ID 4V6W and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v6w.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v6w.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 908927.41
    Molecule: 60S ribosomal protein L10a-2
    Polymer: 1 Type: protein Length: 218
    Chains: z
    Organism: Drosophila melanogaster
    Gene Names: RpL10Ab CG7283
    UniProtKB: Protein Feature View | Search PDB | Q9VTP4  
    Molecule: 60S acidic ribosomal protein P0
    Polymer: 2 Type: protein Length: 223
    Chains: q
    Fragment: SEE REMARK 999
    Organism: Drosophila melanogaster
    Gene Name: Gene View for RPLP0
    UniProtKB: Protein Feature View | Search PDB | P05388  
    Molecule: 60S ribosomal protein L12
    Polymer: 3 Type: protein Length: 165
    Chains: K
    Organism: Drosophila melanogaster
    Gene Names: RpL12 CG3195 Dmel_CG3195
    UniProtKB: Protein Feature View | Search PDB | Q9W1B9  
    Molecule: 60S ribosomal protein L13a
    Polymer: 4 Type: protein Length: 205
    Chains: O
    Organism: Drosophila melanogaster
    Gene Names: RpL13A CG1475
    UniProtKB: Protein Feature View | Search PDB | Q9VNE9  
    Molecule: 60S ribosomal protein L13
    Polymer: 5 Type: protein Length: 218
    Chains: L
    Organism: Drosophila melanogaster
    Gene Names: RpL13 bbc1 CG4651
    UniProtKB: Protein Feature View | Search PDB | P41126  
    Molecule: 60S ribosomal protein L23
    Polymer: 6 Type: protein Length: 140
    Chains: V
    Organism: Drosophila melanogaster
    Gene Names: RpL23 RpL17A CG3661
    UniProtKB: Protein Feature View | Search PDB | P48159  
    Molecule: 60S ribosomal protein L14
    Polymer: 7 Type: protein Length: 166
    Chains: M
    Organism: Drosophila melanogaster
    Gene Names: RpL14 CG6253
    UniProtKB: Protein Feature View | Search PDB | P55841  
    Molecule: 60S ribosomal protein L27a
    Polymer: 8 Type: protein Length: 149
    Chains: a
    Organism: Drosophila melanogaster
    Gene Names: RpL27A RpL27a2 RpL27Aa RpL27Ab CG15442
    UniProtKB: Protein Feature View | Search PDB | P41092  
    Molecule: 60S ribosomal protein L15
    Polymer: 9 Type: protein Length: 204
    Chains: N
    Organism: Drosophila melanogaster
    Gene Names: RpL15 ZITI CG17420
    UniProtKB: Protein Feature View | Search PDB | O17445  
    Molecule: 60S ribosomal protein L10
    Polymer: 10 Type: protein Length: 218
    Chains: I
    Organism: Drosophila melanogaster
    Gene Names: RpL10 Qm CG17521
    UniProtKB: Protein Feature View | Search PDB | O61231  
    Molecule: 60S ribosomal protein L5
    Polymer: 11 Type: protein Length: 299
    Chains: D
    Organism: Drosophila melanogaster
    Gene Names: RpL5 yip6 CG17489
    UniProtKB: Protein Feature View | Search PDB | Q9W5R8  
    Molecule: 60S ribosomal protein L18
    Polymer: 12 Type: protein Length: 188
    Chains: Q
    Organism: Drosophila melanogaster
    Gene Names: RpL18 CG8615
    UniProtKB: Protein Feature View | Search PDB | Q9VS34  
    Molecule: 60S ribosomal protein L19
    Polymer: 13 Type: protein Length: 203
    Chains: R
    Organism: Drosophila melanogaster
    Gene Names: RpL19 M(2)60E CG2746
    UniProtKB: Protein Feature View | Search PDB | P36241  
    Molecule: 60S ribosomal protein L8
    Polymer: 14 Type: protein Length: 256
    Chains: A
    Organism: Drosophila melanogaster
    Gene Names: RpL8 CG1263
    UniProtKB: Protein Feature View | Search PDB | Q9V3G1  
    Molecule: 60S ribosomal protein L18a
    Polymer: 15 Type: protein Length: 177
    Chains: S
    Organism: Drosophila melanogaster
    Gene Names: RpL18A CG6510
    UniProtKB: Protein Feature View | Search PDB | P41093  
    Molecule: 60S ribosomal protein L21
    Polymer: 16 Type: protein Length: 159
    Chains: T
    Organism: Drosophila melanogaster
    Gene Names: RpL21 CG12775 Dmel_CG12775
    UniProtKB: Protein Feature View | Search PDB | Q9V9M7  
    Molecule: 60S ribosomal protein L17
    Polymer: 17 Type: protein Length: 186
    Chains: P
    Organism: Drosophila melanogaster
    Gene Names: RpL17 CG3203
    UniProtKB: Protein Feature View | Search PDB | Q9W3W8  
    Molecule: 60S ribosomal protein L22
    Polymer: 18 Type: protein Length: 299
    Chains: U
    Organism: Drosophila melanogaster
    Gene Names: RpL22 CG7434
    UniProtKB: Protein Feature View | Search PDB | P50887  
    Molecule: 60S ribosomal protein L23A
    Polymer: 19 Type: protein Length: 277
    Chains: X
    Organism: Drosophila melanogaster
    Gene Names: RpL23A RpL23a CG7977 Dmel_CG7977
    UniProtKB: Protein Feature View | Search PDB | Q9W0A8  
    Molecule: 60S ribosomal protein L26
    Polymer: 20 Type: protein Length: 149
    Chains: Y
    Organism: Drosophila melanogaster
    Gene Names: RpL26 CG6846 Dmel_CG6846
    UniProtKB: Protein Feature View | Search PDB | Q9VVU2  
    Molecule: 60S ribosomal protein L24
    Polymer: 21 Type: protein Length: 155
    Chains: W
    Organism: Drosophila melanogaster
    Gene Names: RpL24 CG9282
    UniProtKB: Protein Feature View | Search PDB | Q9VJY6  
    Molecule: 60S ribosomal protein L27
    Polymer: 22 Type: protein Length: 135
    Chains: Z
    Organism: Drosophila melanogaster
    Gene Names: RpL27 CG4759 Dmel_CG4759
    UniProtKB: Protein Feature View | Search PDB | Q9VBN5  
    Molecule: 60S ribosomal protein L28
    Polymer: 23 Type: protein Length: 144
    Chains: r
    Organism: Drosophila melanogaster
    Gene Names: RpL28 CG12740
    UniProtKB: Protein Feature View | Search PDB | Q9VZS5  
    Molecule: 60S ribosomal protein L35
    Polymer: 24 Type: protein Length: 123
    Chains: h
    Organism: Drosophila melanogaster
    Gene Names: RpL35 RpL35-RB CG4111 Dmel_CG4111
    UniProtKB: Protein Feature View | Search PDB | Q9W499  
    Molecule: 60S ribosomal protein L29
    Polymer: 25 Type: protein Length: 76
    Chains: b
    Organism: Drosophila melanogaster
    Gene Names: RpL29 RpL43 CG10071
    UniProtKB: Protein Feature View | Search PDB | Q24154  
    Molecule: 60S ribosomal protein L3
    Polymer: 26 Type: protein Length: 416
    Chains: B
    Organism: Drosophila melanogaster
    Gene Names: RpL3 CG4863
    UniProtKB: Protein Feature View | Search PDB | O16797  
    Molecule: 60S ribosomal protein L7
    Polymer: 27 Type: protein Length: 252
    Chains: F
    Organism: Drosophila melanogaster
    Gene Names: RpL7 CG4897
    UniProtKB: Protein Feature View | Search PDB | P32100  
    Molecule: 60S ribosomal protein L30
    Polymer: 28 Type: protein Length: 111
    Chains: c
    Organism: Drosophila melanogaster
    Gene Names: RpL30 CG10652 Dmel_CG10652
    UniProtKB: Protein Feature View | Search PDB | Q9VJ19  
    Molecule: 60S ribosomal protein L31
    Polymer: 29 Type: protein Length: 124
    Chains: d
    Organism: Drosophila melanogaster
    Gene Names: RpL31 CG1821
    UniProtKB: Protein Feature View | Search PDB | Q9V597  
    Molecule: 60S ribosomal protein L32
    Polymer: 30 Type: protein Length: 134
    Chains: e
    Organism: Drosophila melanogaster
    Gene Names: RpL32 M(3)99D rp49 CG7939
    UniProtKB: Protein Feature View | Search PDB | P04359  
    Molecule: 60S ribosomal protein L35A
    Polymer: 31 Type: protein Length: 157
    Chains: f
    Organism: Drosophila melanogaster
    Gene Names: RpL35A CG2099 Dmel_CG2099
    UniProtKB: Protein Feature View | Search PDB | Q9VNB9  
    Molecule: 60S ribosomal protein L34a
    Polymer: 32 Type: protein Length: 162
    Chains: g
    Organism: Drosophila melanogaster
    Gene Names: RpL34a CG6090-RA CG6090 Dmel_CG6090
    UniProtKB: Protein Feature View | Search PDB | Q9VBH8  
    Molecule: 60S ribosomal protein L36
    Polymer: 33 Type: protein Length: 115
    Chains: i
    Organism: Drosophila melanogaster
    Gene Names: RpL36 M(1)1B CG7622
    UniProtKB: Protein Feature View | Search PDB | P49630  
    Molecule: 60S ribosomal protein L37-A
    Polymer: 34 Type: protein Length: 93
    Chains: j
    Organism: Drosophila melanogaster
    Gene Names: RpL37a CG9091
    UniProtKB: Protein Feature View | Search PDB | Q9VXX8  
    Molecule: 60S ribosomal protein L38
    Polymer: 35 Type: protein Length: 70
    Chains: k
    Organism: Drosophila melanogaster
    Gene Names: RpL38 CG18001
    UniProtKB: Protein Feature View | Search PDB | Q9W5N2  
    Molecule: 60S ribosomal protein L39
    Polymer: 36 Type: protein Length: 51
    Chains: l
    Organism: Drosophila melanogaster
    Gene Names: RpL39 rp46 RpL46 CG3997
    UniProtKB: Protein Feature View | Search PDB | O16130  
    Molecule: 60S ribosomal protein L4
    Polymer: 37 Type: protein Length: 401
    Chains: C
    Organism: Drosophila melanogaster
    Gene Names: RpL4 RpL1 CG5502
    UniProtKB: Protein Feature View | Search PDB | P09180  
    Molecule: 60S ribosomal protein L40
    Polymer: 38 Type: protein Length: 52
    Chains: m
    Organism: Drosophila melanogaster
    Gene Names: RpL40 Ubi-f UBI-F52 CG2960
    UniProtKB: Protein Feature View | Search PDB | P18101  
    Molecule: 60S ribosomal protein L41
    Polymer: 39 Type: protein Length: 25
    Chains: n
    Organism: Drosophila melanogaster
    Gene Names: RpL41 CG30425 Dmel_CG30425
    UniProtKB: Protein Feature View | Search PDB | Q962S2  
    Molecule: 60S ribosomal protein L37a
    Polymer: 40 Type: protein Length: 92
    Chains: p
    Organism: Drosophila melanogaster
    Gene Names: RpL37A CG5827
    UniProtKB: Protein Feature View | Search PDB | Q9VMU4  
    Molecule: 60S ribosomal protein L36A
    Polymer: 41 Type: protein Length: 104
    Chains: o
    Organism: Drosophila melanogaster
    Gene Names: RpL36A CG7424 Dmel_CG7424
    UniProtKB: Protein Feature View | Search PDB | Q9VLT7  
    Molecule: 60S ribosomal protein L11
    Polymer: 42 Type: protein Length: 184
    Chains: J
    Organism: Drosophila melanogaster
    Gene Names: RpL11 RPL11A CG7726
    UniProtKB: Protein Feature View | Search PDB | P46222  
    Molecule: 60S ribosomal protein L9
    Polymer: 43 Type: protein Length: 190
    Chains: H
    Organism: Drosophila melanogaster
    Gene Names: RpL9 M(2)32D CG6141
    UniProtKB: Protein Feature View | Search PDB | P50882  
    Molecule: 60S ribosomal protein L6, isoform A
    Polymer: 44 Type: protein Length: 243
    Chains: E
    Organism: Drosophila melanogaster
    Gene Names: RpL6 CG11522 Dmel_CG11522
    UniProtKB: Protein Feature View | Search PDB | Q9V9W2  
    Molecule: 60S ribosomal protein L7a
    Polymer: 45 Type: protein Length: 271
    Chains: G
    Organism: Drosophila melanogaster
    Gene Names: RpL7A SURF-3 CG3314
    UniProtKB: Protein Feature View | Search PDB | P46223  
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 2
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 3
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 4
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 5
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 6
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 7
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 8
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 9
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 10
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 11
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 12
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 13
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 14
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 15
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 16
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 17
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 18
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 19
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 20
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 21
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 22
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 23
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 24
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 25
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 26
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 27
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 28
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 29
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 30
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 31
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 32
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 33
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 34
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 35
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 36
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 37
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 38
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 39
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 40
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 41
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 42
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 43
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 44
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 45
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
     
  •   Related PDB Entries Hide
    Identifier Details
    3J3A   
    3J3B   
    3J3D   
    3J3F   
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (3J38, 3J3C, 3J39, 3J3E)