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Structure of the D. melanogaster 40S ribosomal proteins
3J38
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3J38   3J39   3J3C   3J3E  
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The complete entry has been assigned PDB ID 4V6W and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v6w.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v6w.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 729677.02
    Molecule: Elongation factor 2
    Polymer: 1 Type: protein Length: 844
    Chains: z
    Organism: Drosophila melanogaster
    Gene Names: EF2 Ef2b CG2238
    UniProtKB: Protein Feature View | Search PDB | P13060  
    Molecule: Guanine nucleotide-binding protein subunit beta-like protein
    Polymer: 2 Type: protein Length: 318
    Chains: g
    Organism: Drosophila melanogaster
    Gene Names: Rack1 CG7111
    UniProtKB: Protein Feature View | Search PDB | O18640  
    Molecule: 40S ribosomal protein S20
    Polymer: 3 Type: protein Length: 120
    Chains: U
    Organism: Drosophila melanogaster
    Gene Names: RpS20 CG15693
    UniProtKB: Protein Feature View | Search PDB | P55828  
    Molecule: 40S ribosomal protein S10a
    Polymer: 4 Type: protein Length: 163
    Chains: K
    Organism: Drosophila melanogaster
    Gene Names: RpS10a RpS10 CG12275
    UniProtKB: Protein Feature View | Search PDB | Q9VB14  
    Molecule: 40S ribosomal protein S14
    Polymer: 5 Type: protein Length: 151
    Chains: O
    Organism: Drosophila melanogaster
    Gene Names: RpS14a CG1524 RpS14b CG1527
    UniProtKB: Protein Feature View | Search PDB | P14130  
    Molecule: 40S ribosomal protein S23
    Polymer: 6 Type: protein Length: 143
    Chains: X
    Organism: Drosophila melanogaster
    Gene Names: RpS23 CG8415
    UniProtKB: Protein Feature View | Search PDB | Q8T3U2  
    Molecule: 40S ribosomal protein S12
    Polymer: 7 Type: protein Length: 139
    Chains: M
    Organism: Drosophila melanogaster
    Gene Names: RpS12 RpS12E CG11271
    UniProtKB: Protein Feature View | Search PDB | P80455  
    Molecule: 40S ribosomal protein S18
    Polymer: 8 Type: protein Length: 152
    Chains: S
    Organism: Drosophila melanogaster
    Gene Names: RpS18 CG8900
    UniProtKB: Protein Feature View | Search PDB | P41094  
    Molecule: 40S ribosomal protein S29
    Polymer: 9 Type: protein Length: 56
    Chains: d
    Organism: Drosophila melanogaster
    Gene Names: RpS29 CG8495
    UniProtKB: Protein Feature View | Search PDB | Q9VH69  
    Molecule: 40S ribosomal protein S13
    Polymer: 10 Type: protein Length: 151
    Chains: N
    Organism: Drosophila melanogaster
    Gene Names: RpS13 M(2)32A Rp17 CG13389
    UniProtKB: Protein Feature View | Search PDB | Q03334  
    Molecule: 40S ribosomal protein S11
    Polymer: 11 Type: protein Length: 155
    Chains: L
    Organism: Drosophila melanogaster
    Gene Names: RpS11 CG8857
    UniProtKB: Protein Feature View | Search PDB | Q0E9B6  
    Molecule: 40S ribosomal protein S17
    Polymer: 12 Type: protein Length: 131
    Chains: R
    Organism: Drosophila melanogaster
    Gene Names: RpS17 M(3)67C CG3922
    UniProtKB: Protein Feature View | Search PDB | P17704  
    Molecule: 40S ribosomal protein S15, isoform A
    Polymer: 13 Type: protein Length: 148
    Chains: P
    Organism: Drosophila melanogaster
    Gene Names: RpS15 CG8332 Dmel_CG8332
    UniProtKB: Protein Feature View | Search PDB | Q7JZW2  
    Molecule: 40S ribosomal protein S19a
    Polymer: 14 Type: protein Length: 156
    Chains: T
    Organism: Drosophila melanogaster
    Gene Names: RpS19a RpS19 CG4464
    UniProtKB: Protein Feature View | Search PDB | P39018  
    Molecule: 40S ribosomal protein S3a
    Polymer: 15 Type: protein Length: 268
    Chains: B
    Organism: Drosophila melanogaster
    Gene Names: RpS3A Gene View for C3 M(4)101 CG2168
    UniProtKB: Protein Feature View | Search PDB | P55830  
    Molecule: 40S ribosomal protein SA
    Polymer: 16 Type: protein Length: 313
    Chains: A
    Organism: Drosophila melanogaster
    Gene Names: sta CG14792
    UniProtKB: Protein Feature View | Search PDB | P38979  
    Molecule: 40S ribosomal protein S21
    Polymer: 17 Type: protein Length: 83
    Chains: V
    Organism: Drosophila melanogaster
    Gene Names: RpS21 oho23B CG2986
    UniProtKB: Protein Feature View | Search PDB | O76927  
    Molecule: 40S ribosomal protein S24
    Polymer: 18 Type: protein Length: 131
    Chains: Y
    Organism: Drosophila melanogaster
    Gene Names: RpS24 CG3751 Dmel_CG3751
    UniProtKB: Protein Feature View | Search PDB | Q9W229  
    Molecule: 40S ribosomal protein S25
    Polymer: 19 Type: protein Length: 117
    Chains: Z
    Organism: Drosophila melanogaster
    Gene Names: RpS25 RpS31 CG6684
    UniProtKB: Protein Feature View | Search PDB | P48588  
    Molecule: 40S ribosomal protein S26
    Polymer: 20 Type: protein Length: 114
    Chains: a
    Organism: Drosophila melanogaster
    Gene Names: RpS26 CG10305
    UniProtKB: Protein Feature View | Search PDB | P13008  
    Molecule: 40S ribosomal protein S27
    Polymer: 21 Type: protein Length: 84
    Chains: b
    Organism: Drosophila melanogaster
    Gene Names: RpS27 CG10423 Dmel_CG10423
    UniProtKB: Protein Feature View | Search PDB | Q9VBU9  
    Molecule: 40S ribosomal protein S28
    Polymer: 22 Type: protein Length: 65
    Chains: c
    Organism: Drosophila melanogaster
    Gene Names: RpS28b CG2998
    UniProtKB: Protein Feature View | Search PDB | Q9W334  
    Molecule: 40S ribosomal protein S3
    Polymer: 23 Type: protein Length: 246
    Chains: D
    Organism: Drosophila melanogaster
    Gene Names: RpS3 M(3)95A CG6779
    UniProtKB: Protein Feature View | Search PDB | Q06559  
    Molecule: 40S ribosomal protein S30, isoform A
    Polymer: 24 Type: protein Length: 132
    Chains: e
    Organism: Drosophila melanogaster
    Gene Names: RpS30 CG15697 Dmel_CG15697
    UniProtKB: Protein Feature View | Search PDB | Q9VDH8  
    Molecule: 40S ribosomal protein S27a
    Polymer: 25 Type: protein Length: 80
    Chains: f
    Organism: Drosophila melanogaster
    Gene Names: RpS27A UB3-D UBI-F80 Ubi-m CG5271
    UniProtKB: Protein Feature View | Search PDB | P15357  
    Molecule: 40S ribosomal protein S9
    Polymer: 26 Type: protein Length: 195
    Chains: J
    Organism: Drosophila melanogaster
    Gene Names: RpS9 CG3395
    UniProtKB: Protein Feature View | Search PDB | P55935  
    Molecule: 40S ribosomal protein S4
    Polymer: 27 Type: protein Length: 261
    Chains: E
    Organism: Drosophila melanogaster
    Gene Names: RpS4 RP4 CG11276
    UniProtKB: Protein Feature View | Search PDB | P41042  
    Molecule: 40S ribosomal protein S2
    Polymer: 28 Type: protein Length: 267
    Chains: C
    Organism: Drosophila melanogaster
    Gene Names: RpS2 sop CG5920
    UniProtKB: Protein Feature View | Search PDB | P31009  
    Molecule: 40S ribosomal protein S6
    Polymer: 29 Type: protein Length: 248
    Chains: G
    Organism: Drosophila melanogaster
    Gene Names: RpS6 hen l(1)air8 CG10944
    UniProtKB: Protein Feature View | Search PDB | P29327  
    Molecule: 40S ribosomal protein S5a
    Polymer: 30 Type: protein Length: 228
    Chains: F
    Organism: Drosophila melanogaster
    Gene Names: RpS5a M(1)15D RpS5 CG8922
    UniProtKB: Protein Feature View | Search PDB | Q24186  
    Molecule: 40S ribosomal protein S7
    Polymer: 31 Type: protein Length: 194
    Chains: H
    Organism: Drosophila melanogaster
    Gene Names: RpS7 CG1883
    UniProtKB: Protein Feature View | Search PDB | Q9VA91  
    Molecule: 40S ribosomal protein S15Aa
    Polymer: 32 Type: protein Length: 130
    Chains: W
    Organism: Drosophila melanogaster
    Gene Names: RpS15Aa RpS15A CG2033
    UniProtKB: Protein Feature View | Search PDB | P48149  
    Molecule: 40S ribosomal protein S8
    Polymer: 33 Type: protein Length: 208
    Chains: I
    Organism: Drosophila melanogaster
    Gene Names: RpS8 CG7808
    UniProtKB: Protein Feature View | Search PDB | Q8MLY8  
    Molecule: 40S ribosomal protein S16
    Polymer: 34 Type: protein Length: 148
    Chains: Q
    Organism: Drosophila melanogaster
    Gene Names: RpS16 CG4046
    UniProtKB: Protein Feature View | Search PDB | Q9W237  
    Molecule: Vig2, isoform B
    Polymer: 35 Type: protein Length: 121
    Chains: h
    Organism: Drosophila melanogaster
    Gene Names: vig2 CG11844 Dmel_CG11844
    UniProtKB: Protein Feature View | Search PDB | Q9VBX3  
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 2
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 3
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 4
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 5
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 6
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 7
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 8
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 9
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 10
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 11
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 12
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 13
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 14
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 15
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 16
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 17
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 18
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 19
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 20
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 21
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 22
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 23
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 24
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 25
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 26
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 27
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 28
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 29
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 30
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 31
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 32
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 33
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 34
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
    Polymer: 35
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly  
     
  •   Related PDB Entries Hide
    Identifier Details
    3J3A   
    3J3B   
    3J3D   
    3J3F   
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (3J38, 3J3C, 3J39, 3J3E)