3J0A
Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction
- PDB DOI: https://doi.org/10.2210/pdb3J0A/pdb
- EM Map EMD-5287: EMDB EMDataResource
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No 
- Deposited: 2011-06-02 Released: 2011-12-28 
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 26.0 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Toll-like receptor 5 | 844 | Homo sapiens | Mutation(s): 0  Gene Names: TIL3, TLR5 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60602 (Homo sapiens) Explore O60602  Go to UniProtKB:  O60602 | |||||
PHAROS:  O60602 GTEx:  ENSG00000187554  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60602 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | C, D, E, F, G C, D, E, F, G, H, I, J, K, L, M, N, O, P | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G86851RC GlyCosmos:  G86851RC GlyGen:  G86851RC |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 26.0 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | IMAGIC | |
RECONSTRUCTION | SPIDER |
Entry History 
Deposition Data
- Released Date: 2011-12-28  Deposition Author(s): Modis, Y., Zhou, K., Kanai, R., Lee, P., Wang, H.W.
Revision History (Full details and data files)
- Version 1.0: 2011-12-28
Type: Initial release - Version 1.1: 2012-03-07
Changes: Database references - Version 1.2: 2018-07-18
Changes: Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary