3IXZ

Pig gastric H+/K+-ATPase complexed with aluminium fluoride


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Inter-subunit interaction of gastric H+,K+-ATPase prevents reverse reaction of the transport cycle

Abe, K.Tani, K.Nishizawa, T.Fujiyoshi, Y.

(2009) EMBO J 28: 1637-1643

  • DOI: https://doi.org/10.1038/emboj.2009.102
  • Primary Citation of Related Structures:  
    3IXZ

  • PubMed Abstract: 

    The gastric H(+),K(+)-ATPase is an ATP-driven proton pump responsible for generating a million-fold proton gradient across the gastric membrane. We present the structure of gastric H(+),K(+)-ATPase at 6.5 A resolution as determined by electron crystallography of two-dimensional crystals. The structure shows the catalytic alpha-subunit and the non-catalytic beta-subunit in a pseudo-E(2)P conformation. Different from Na(+),K(+)-ATPase, the N-terminal tail of the beta-subunit is in direct contact with the phosphorylation domain of the alpha-subunit. This interaction may hold the phosphorylation domain in place, thus stabilizing the enzyme conformation and preventing the reverse reaction of the transport cycle. Indeed, truncation of the beta-subunit N-terminus allowed the reverse reaction to occur. These results suggest that the beta-subunit N-terminus prevents the reverse reaction from E(2)P to E(1)P, which is likely to be relevant for the generation of a large H(+) gradient in vivo situation.


  • Organizational Affiliation

    Department of Biophysics, Faculty of Science, Kyoto University, Kyoto, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium-transporting ATPase alpha1,034Sus scrofaMutation(s): 0 
EC: 3.6.3.10
Membrane Entity: Yes 
UniProt
Find proteins for P19156 (Sus scrofa)
Explore P19156 
Go to UniProtKB:  P19156
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19156
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium-transporting ATPase subunit beta290Sus scrofaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P18434 (Sus scrofa)
Explore P18434 
Go to UniProtKB:  P18434
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18434
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 140.4α = 90
b = 109β = 90
c = 320γ = 90
Software Package:
Software NamePurpose
MRCmodel building
MRCphasing
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONMRC

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-06-23
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2018-07-18
    Changes: Author supporting evidence, Data collection
  • Version 1.3: 2024-02-21
    Changes: Data collection, Database references, Refinement description