Download MendeleyCRYSTAL STRUCTURE OF PUTATIVE long-chain-fatty-acid CoA SYNTHASE FROM Rhodopseudomonas palustris CGA009
Patskovsky, Y., Toro, R., Foti, R., Dickey, M., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3IVR
CRYSTAL STRUCTURE OF PUTATIVE long-chain-fatty-acid CoA ligase FROM Rhodopseudomonas palustris CGA009
- PDB DOI: https://doi.org/10.2210/pdb3IVR/pdb
- Classification: LIGASE
- Organism(s): Rhodopseudomonas palustris
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-09-01 Released: 2009-09-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.217
- R-Value Work: 0.173
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative long-chain-fatty-acid CoA ligase | 509 | Rhodopseudomonas palustris | Mutation(s): 0 Gene Names: fadD1, RPA1242 EC: 6.2.1.3 |  | |
UniProt | |||||
Find proteins for Q6NAE3 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore Q6NAE3 Go to UniProtKB: Q6NAE3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6NAE3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A] D [auth A] E [auth A] F [auth A] G [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.217
- R-Value Work: 0.173
- R-Value Observed: 0.174
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 127.624 | α = 90 |
| b = 97.213 | β = 102.04 |
| c = 95.077 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2009-09-08 Deposition Author(s): Patskovsky, Y., Toro, R., Foti, R., Dickey, M., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-09-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2018-11-21
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-21
Changes: Data collection, Database references
