Download MendeleyCrystal structure of human 3-hydroxyacyl-thioester dehydratase 2 (HTD2)
Ugochukwu, E., Cocking, R., Burgess-Brown, N., Pilka, E., Kavanagh, K.L., Oppermann, U.To be published.
3IR3
Crystal structure of human 3-hydroxyacyl-thioester dehydratase 2 (HTD2)
- PDB DOI: https://doi.org/10.2210/pdb3IR3/pdb
- Classification: LYASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-08-21 Released: 2009-09-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.99 Å
- R-Value Free: 0.203
- R-Value Work: 0.170
- R-Value Observed: 0.172
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-hydroxyacyl-thioester dehydratase 2 | 148 | Homo sapiens | Mutation(s): 0 Gene Names: HTD2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P86397 (Homo sapiens) Explore P86397 Go to UniProtKB: P86397 | |||||
PHAROS: P86397 GTEx: ENSG00000255154 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P86397 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLI Query on MLI | C [auth A] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.99 Å
- R-Value Free: 0.203
- R-Value Work: 0.170
- R-Value Observed: 0.172
- Space Group: P 61
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 99.88 | α = 90 |
| b = 99.88 | β = 90 |
| c = 77.72 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MAR345 | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2009-09-22 Deposition Author(s): Ugochukwu, E., Cocking, R., Burgess-Brown, N., Pilka, E., Muniz, J., Krojer, T., Chaikuad, A., Gileadi, O., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Kavanagh, K.L., Oppermann, U., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2009-09-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
