Download MendeleyCrystal Structure of a Geranyltranstransferase from the Methanosarcina mazei
Kumaran, D., Mohammed, M.B., Brown, A., Burley, S.K., Swaminathan, S.To be published.
3IPI
Crystal Structure of a Geranyltranstransferase from the Methanosarcina mazei
- PDB DOI: https://doi.org/10.2210/pdb3IPI/pdb
- Classification: TRANSFERASE
- Organism(s): Methanosarcina mazei
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-08-17 Released: 2009-09-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.251
- R-Value Work: 0.214
- R-Value Observed: 0.214
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Geranyltranstransferase | 295 | Methanosarcina mazei | Mutation(s): 0 Gene Names: MM_0789 EC: 2.5.1 |  | |
UniProt | |||||
Find proteins for Q8PYS1 (Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)) Explore Q8PYS1 Go to UniProtKB: Q8PYS1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8PYS1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLA Query on MLA | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | MALONIC ACID C3 H4 O4 OFOBLEOULBTSOW-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.251
- R-Value Work: 0.214
- R-Value Observed: 0.214
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.16 | α = 90 |
| b = 81.273 | β = 90 |
| c = 49.689 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELXD | phasing |
| SHELXE | model building |
| ARP/wARP | model building |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-09-08 Deposition Author(s): Kumaran, D., Mohammed, M.B., Brown, A., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-09-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2015-04-29
Changes: Non-polymer description - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
