Download MendeleyThe crystal structure of the aminopeptidase P,XAA-pro aminopeptidase from Streptococcus thermophilus
Zhang, R., Hatzos, C., Cobb, G., Joachimiak, A.To be published.
3IL0
The crystal structure of the aminopeptidase P,XAA-pro aminopeptidase from Streptococcus thermophilus
- PDB DOI: https://doi.org/10.2210/pdb3IL0/pdb
- Classification: HYDROLASE
- Organism(s): Streptococcus thermophilus LMG 18311
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2009-08-06 Released: 2009-09-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.237
- R-Value Work: 0.201
- R-Value Observed: 0.203
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aminopeptidase P; XAA-pro aminopeptidase | 131 | Streptococcus thermophilus LMG 18311 | Mutation(s): 0 Gene Names: GI:55737699, pepP, stu1742 |  | |
UniProt | |||||
Find proteins for Q5M2R3 (Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)) Explore Q5M2R3 Go to UniProtKB: Q5M2R3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5M2R3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.237
- R-Value Work: 0.201
- R-Value Observed: 0.203
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.303 | α = 90 |
| b = 80.396 | β = 90 |
| c = 100.858 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-09-08 Deposition Author(s): Zhang, R., Hatzos, C., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-09-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations
