Download MendeleyCrystal structure of putative tellurium resistant like protein (TerD) from Streptomyces coelicolor A3(2)
Klimecka, M., Chruszcz, M., Cymborowski, M., Xu, X., Cui, H., Joachimiak, A., Edwards, A., Savchenko, A., Minor, W.To be published.
3IBZ
Crystal structure of putative tellurium resistant like protein (TerD) from Streptomyces coelicolor A3(2)
- PDB DOI: https://doi.org/10.2210/pdb3IBZ/pdb
- Classification: structural genomics, unknown function
- Organism(s): Streptomyces coelicolor A3(2)
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-07-17 Released: 2009-08-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.200
- R-Value Work: 0.163
- R-Value Observed: 0.164
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative tellurium resistant like protein TerD | 191 | Streptomyces coelicolor A3(2) | Mutation(s): 0 Gene Names: SCC8A.26c, SCO2368 |  | |
UniProt | |||||
Find proteins for Q9KY22 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore Q9KY22 Go to UniProtKB: Q9KY22 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KY22 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A], E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CA Query on CA | B [auth A], C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.200
- R-Value Work: 0.163
- R-Value Observed: 0.164
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 34.836 | α = 90 |
| b = 61.456 | β = 90 |
| c = 85.713 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | model building |
| SHELXD | phasing |
| RESOLVE | model building |
| ARP | model building |
| Coot | model building |
| CCP4 | model building |
| SHELXE | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2009-08-18 Deposition Author(s): Klimecka, M., Chruszcz, M., Cymborowski, M., Xu, X., Cui, H., Joachimiak, A., Edwards, A., Savchenko, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-08-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Advisory, Refinement description - Version 1.3: 2022-04-13
Changes: Advisory, Database references, Derived calculations, Structure summary
