Download MendeleyCrystal Structure of Thioredoxin from Methanosarcina mazei
Syed Ibrahim, B., Burley, S.K., Swaminathan, S.To be published.
3HZ4
Crystal Structure of Thioredoxin from Methanosarcina mazei
- PDB DOI: https://doi.org/10.2210/pdb3HZ4/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Methanosarcina mazei
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-06-23 Released: 2009-06-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.247
- R-Value Work: 0.191
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thioredoxin | 140 | Methanosarcina mazei | Mutation(s): 0 Gene Names: MM_2079 |  | |
UniProt | |||||
Find proteins for Q8PV92 (Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)) Explore Q8PV92 Go to UniProtKB: Q8PV92 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8PV92 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | C [auth B], D [auth B], E [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.247
- R-Value Work: 0.191
- R-Value Observed: 0.193
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.068 | α = 90 |
| b = 82.068 | β = 90 |
| c = 93.874 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELX | model building |
| SHARP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2009-06-30 Deposition Author(s): Syed Ibrahim, B., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-06-30
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
