Download MendeleyX-ray crystal structure of putative hemolysin from Streptococcus thermophilus.
Osipiuk, J., Hatzos, C., Cobb, G., Joachimiak, A.To be published.
3HP7
Putative hemolysin from Streptococcus thermophilus.
- PDB DOI: https://doi.org/10.2210/pdb3HP7/pdb
- Classification: structural genomics, unknown function
- Organism(s): Streptococcus thermophilus LMG 18311
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-06-03 Released: 2009-06-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.53 Å
- R-Value Free: 0.177
- R-Value Work: 0.145
- R-Value Observed: 0.147
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemolysin, putative | 291 | Streptococcus thermophilus LMG 18311 | Mutation(s): 0 Gene Names: stu1215 |  | |
UniProt | |||||
Find proteins for Q5M3Z4 (Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)) Explore Q5M3Z4 Go to UniProtKB: Q5M3Z4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5M3Z4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EOH Query on EOH | B [auth A] | ETHANOL C2 H6 O LFQSCWFLJHTTHZ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.53 Å
- R-Value Free: 0.177
- R-Value Work: 0.145
- R-Value Observed: 0.147
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.958 | α = 90 |
| b = 81.713 | β = 90 |
| c = 95.537 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2009-06-16 Deposition Author(s): Osipiuk, J., Hatzos, C., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-06-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
