Download MendeleyCrystal structure of a class III aminotransferase from Silicibacter pomeroyi
Toro, R., Bonanno, J.B., Ramagopal, U., Freeman, J., Bain, K.T., Miller, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3HMU
Crystal structure of a class III aminotransferase from Silicibacter pomeroyi
- PDB DOI: https://doi.org/10.2210/pdb3HMU/pdb
- Classification: TRANSFERASE
- Organism(s): Ruegeria pomeroyi
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-05-29 Released: 2009-07-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.193
- R-Value Work: 0.150
- R-Value Observed: 0.152
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aminotransferase, class III | 472 | Ruegeria pomeroyi | Mutation(s): 0 Gene Names: SPO3471 |  | |
UniProt | |||||
Find proteins for Q5LMU1 (Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)) Explore Q5LMU1 Go to UniProtKB: Q5LMU1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5LMU1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CL Query on CL | D [auth A], F [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.193
- R-Value Work: 0.150
- R-Value Observed: 0.152
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.246 | α = 90 |
| b = 113.605 | β = 90 |
| c = 130.985 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| HKL-2000 | data reduction |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2009-07-14 Deposition Author(s): Toro, R., Bonanno, J.B., Ramagopal, U., Freeman, J., Bain, K.T., Miller, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-07-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2018-11-28
Changes: Data collection, Source and taxonomy - Version 1.5: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.6: 2024-02-21
Changes: Data collection, Database references
