Download MendeleyThe Crystal Structure of a Bacterial Regulatory Protein in the tetR Family from Rhodococcus RHA1 to 2.2A
Stein, A.J., Binkowski, T.A., Evdokimova, E., Kagan, O., Edwards, A., Savchenko, A., Joachimiak, A.To be published.
3HIM
The Crystal Structure of a Bacterial Regulatory Protein in the tetR Family from Rhodococcus RHA1 to 2.2A
- PDB DOI: https://doi.org/10.2210/pdb3HIM/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Rhodococcus jostii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-05-20 Released: 2009-05-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.248
- R-Value Work: 0.197
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable transcriptional regulator | 211 | Rhodococcus jostii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q0SD48 (Rhodococcus jostii (strain RHA1)) Explore Q0SD48 Go to UniProtKB: Q0SD48 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0SD48 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.248
- R-Value Work: 0.197
- R-Value Observed: 0.200
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.053 | α = 90 |
| b = 63.042 | β = 90 |
| c = 94.766 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
| SHELX | phasing |
| MLPHARE | phasing |
| DM | phasing |
| ARP/wARP | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2009-05-26 Deposition Author(s): Stein, A.J., Binkowski, T.A., Evdokimova, E., Kagan, O., Edwards, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-05-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2024-02-21
Changes: Data collection, Database references
