Download MendeleyThe crystal structure of the adenylosuccinate synthetase from Yersinia pestis CO92
Zhang, R., Zhou, M., Peterson, S., Anderson, W., Joachimiak, A.To be published.
3HID
Crystal structure of adenylosuccinate synthetase from Yersinia pestis CO92
- PDB DOI: https://doi.org/10.2210/pdb3HID/pdb
- Classification: LIGASE
- Organism(s): Yersinia pestis CO92
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-05-19 Released: 2009-06-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.198
- R-Value Work: 0.160
- R-Value Observed: 0.162
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenylosuccinate synthetase | 432 | Yersinia pestis CO92 | Mutation(s): 0 Gene Names: gi:16120713, purA, y0635, YPO0378, YP_0534 EC: 6.3.4.4 |  | |
UniProt | |||||
Find proteins for Q8ZIV7 (Yersinia pestis) Explore Q8ZIV7 Go to UniProtKB: Q8ZIV7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZIV7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG6 Query on PG6 | B [auth A] | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE C12 H26 O6 DMDPGPKXQDIQQG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.198
- R-Value Work: 0.160
- R-Value Observed: 0.162
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.903 | α = 90 |
| b = 68.903 | β = 90 |
| c = 199.166 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-06-02 Deposition Author(s): Zhang, R., Zhou, M., Peterson, S., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2009-06-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations
