Download MendeleyCrystal structure of the choline binding domain of Spr1274 in Streptococcus pneumoniae
Zhang, Z.-Y., Li, W.-Z., Frolet, C., Bao, R., Di-guilmi, A.-M., Jiang, Y.-L., Zhou, C.-Z., Chen, Y.-X.To be published.
3HIA
Crystal structure of the choline binding domain of Spr1274 in Streptococcus pneumoniae
- PDB DOI: https://doi.org/10.2210/pdb3HIA/pdb
- Classification: CHOLINE-BINDING PROTEIN
- Organism(s): Streptococcus pneumoniae R6
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-05-19 Released: 2009-08-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.265
- R-Value Work: 0.223
- R-Value Observed: 0.229
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Choline binding protein | 94 | Streptococcus pneumoniae R6 | Mutation(s): 0 Gene Names: spr1274 |  | |
UniProt | |||||
Find proteins for Q8DP99 (Streptococcus pneumoniae (strain ATCC BAA-255 / R6)) Explore Q8DP99 Go to UniProtKB: Q8DP99 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8DP99 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PC Query on PC | D [auth A] F [auth B] G [auth B] H [auth B] I [auth B] | PHOSPHOCHOLINE C5 H15 N O4 P YHHSONZFOIEMCP-UHFFFAOYSA-O |  | ||
| SO4 Query on SO4 | E [auth A], J [auth B], M [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.265
- R-Value Work: 0.223
- R-Value Observed: 0.229
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 140.61 | α = 90 |
| b = 140.61 | β = 90 |
| c = 46.05 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2009-08-04 Deposition Author(s): Zhang, Z.-Y., Li, W.-Z., Jiang, Y.-L., Bao, R., Zhou, C.-Z., Chen, Y.-X.
Revision History (Full details and data files)
- Version 1.0: 2009-08-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
