Download MendeleyCrystal structure of ribose-5-phosphate isomerase A from Bartonella henselae
Edwards, T.E., Abendroth, J.A., Staker, B.L., Seattle Structural Genomics Center for Infectious DiseaseTo be published.
3HHE
Crystal structure of ribose-5-phosphate isomerase A from Bartonella henselae
- PDB DOI: https://doi.org/10.2210/pdb3HHE/pdb
- Classification: ISOMERASE
- Organism(s): Bartonella henselae str. Houston-1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-05-15 Released: 2009-05-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.249
- R-Value Work: 0.205
- R-Value Observed: 0.207
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribose-5-phosphate isomerase A | 255 | Bartonella henselae str. Houston-1 | Mutation(s): 0 Gene Names: rpiA, BH06410 EC: 5.3.1.6 |  | |
UniProt | |||||
Find proteins for Q6G3V6 (Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)) Explore Q6G3V6 Go to UniProtKB: Q6G3V6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6G3V6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 5RP Query on 5RP | C [auth A], F [auth B] | RIBULOSE-5-PHOSPHATE C5 H11 O8 P FNZLKVNUWIIPSJ-UHNVWZDZSA-N |  | ||
| K Query on K | D [auth A], G [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.249
- R-Value Work: 0.205
- R-Value Observed: 0.207
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.19 | α = 90 |
| b = 79.584 | β = 90 |
| c = 151.127 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-05-26 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2009-05-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
