Download MendeleyCrystal structure of the N-terminal domain of an uncharacterized protein (WS1339) from Wolinella succinogenes
Eswaramoorthy, S., Burley, S.K., Swaminathan, S.To be published.
3HDG
Crystal structure of the N-terminal domain of an uncharacterized protein (WS1339) from Wolinella succinogenes
- PDB DOI: https://doi.org/10.2210/pdb3HDG/pdb
- Classification: structural genomics, unknown function
- Organism(s): Wolinella succinogenes
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-05-07 Released: 2009-05-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 Å
- R-Value Free: 0.270
- R-Value Work: 0.223
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein | A, B, C [auth D], D [auth E] | 137 | Wolinella succinogenes | Mutation(s): 0 Gene Names: WS1339 |  |
UniProt | |||||
Find proteins for Q7MRH8 (Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)) Explore Q7MRH8 Go to UniProtKB: Q7MRH8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7MRH8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | E [auth A], F [auth B], G [auth D], H [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C [auth D], D [auth E] | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 Å
- R-Value Free: 0.270
- R-Value Work: 0.223
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.331 | α = 90 |
| b = 77.059 | β = 102.67 |
| c = 75.087 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELX | model building |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2009-05-19 Deposition Author(s): Eswaramoorthy, S., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-05-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
