Download MendeleyThe 1.7A Crystal Structure of a Thioredoxin-like Protein from Aeropyrum pernix
Stein, A.J., Cuff, M.E., Sather, A., Hendricks, R., Freeman, L., Joachimiak, A.To be published.
3HA9
The 1.7A Crystal Structure of a Thioredoxin-like Protein from Aeropyrum pernix
- PDB DOI: https://doi.org/10.2210/pdb3HA9/pdb
- Classification: structural genomics, unknown function
- Organism(s): Aeropyrum pernix
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-05-01 Released: 2009-05-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.232
- R-Value Work: 0.194
- R-Value Observed: 0.196
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized Thioredoxin-like protein | 165 | Aeropyrum pernix | Mutation(s): 0 Gene Names: APE2568, APE_2568.1 |  | |
UniProt | |||||
Find proteins for Q9Y8R5 (Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)) Explore Q9Y8R5 Go to UniProtKB: Q9Y8R5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y8R5 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.232
- R-Value Work: 0.194
- R-Value Observed: 0.196
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.742 | α = 90 |
| b = 74.742 | β = 90 |
| c = 59.451 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELX | phasing |
| MLPHARE | phasing |
| DM | phasing |
| ARP/wARP | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2009-05-19 Deposition Author(s): Stein, A.J., Cuff, M.E., Sather, A., Hendricks, R., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-05-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
